Climatic stability in the Brazilian Cerrado: implications for biogeographical connections of South American savannas,species richness and conservation in a biodiversity hotspot

Aim To investigate the historical distribution of the Cerrado across Quaternary climatic fluctuations and to generate historical stability maps to test: (1) whether the ‘historical climate’ stability hypothesis explains squamate reptile richness in the Cerrado; and (2) the hypothesis of Pleistocene connections between savannas located north and south of Amazonia. Location The Cerrado, a savanna biome and a global biodiversity hotspot distributed mainly in central Brazil. Methods We generated occurrence datasets from 1000 presence points randomly selected from the entire distribution of the Cerrado, as determined by two spatial definitions. We modelled the potential Cerrado distribution by implementing a maximum‐entropy machine‐learning algorithm across four time projections: current, mid‐Holocene (6 ka), Last Glacial Maximum (LGM, 21 ka) and Last Interglacial (LIG, 120 ka). We generated historical stability maps (refugial areas) by overlapping presence/absence projections of all scenarios, and checked consistencies with qualitative comparisons with available fossil pollen records. We built a spatially explicit simultaneous autoregressive model to explore the relationship between current climate, climatic stability, and squamate species richness. Results Models predicted the LGM and LIG as the periods of narrowest and widest Cerrado distributions, respectively, and were largely corroborated by palynological evidence. We found evidence for two savanna corridors (eastern coastal during the LIG, and Andean during the LGM) and predicted a large refugial area in the north‐eastern Cerrado (Serra Geral de Goiás refugium). Variables related to climatic stability predicted squamate richness better than present climatic variables did. Main conclusions Our results indicate that Bolivian savannas should be included within the Cerrado range and that the Cerrado’s biogeographical counterparts are not Chaco and Caatinga but rather the disjunct savannas of the Guyana shield plateaus. Climatic stability is a good predictor of Cerrado squamate richness, and our stability maps could be used in future studies to test diversity patterns and genetic signatures of different taxonomic groups and as a higher‐order landscape biodiversity surrogate for conservation planning.     

Potamotrygon marquesi,a new species of neotropical freshwater stingray (Potamotrygonidae) from the Brazilian Amazon Basin

Potamotrygon marquesi, sp. nov., is described and compared with other species of Potamotrygon occurring in the Amazon Basin. The identity of this new species is supported by an extensive external and internal morphological study including coloration pattern, squamation, skeleton and ventral lateral-line canals. Morphometrics and meristics were used to further distinguish P. marquesi from congeners. Potamotrygon marquesi was first considered to fall within the range of variation found in P. motoro. However, even with an extensive variation in coloration observed in P. motoro, this new species presents a series of autapomorphies that confidently distinguishes it from what is understood as the morphological variation found in P. motoro. Additional morphological characters that diagnose P. marquesi include three angular cartilages, asymmetrical star-shaped denticles, a single regular row of spines on tail dorsum, lateral row of caudal spines near the sting insertion, dorsal disc background in beige and grey mixed with shades of grey and bearing open and closed bicolored rings, among others. Although presenting a gap of distribution along the west–east extension of the Amazon Basin, its diagnostic charactistics are consistent in both recorded regions. Our study supports the need for many morphological characters to robustly distinguish members of Potamotrygoninae considering their extremely variable dorsal disc color pattern.     

Spectrum structures and biological functions of 8-mers in the human genome

The spectra of k-mer frequencies can reveal the structures and evolution of genome sequences. We confirmed that the trimodal spectrum of 8-mers in human genome sequences is distinguished only by CG2, CG1 and CG0 8-mer sets, containing 2,1 or 0 CpG, respectively. This phenomenon is called independent selection law. The three types of CG 8-mers were considered as different functional elements. We conjectured that (1) nucleosome binding motifs are mainly characterized by CG1 8-mers and (2) the core structural units of CpG island sequences are predominantly characterized by CG2 8-mers. To validate our conjectures, nucleosome occupied sequences and CGI sequences were extracted, then the sequence parameters were constructed through the information of the three CG 8-mer sets respectively. ROC analysis showed that CG1 8-mers are more preference in nucleosome occupied segments (AUC > 0.7) and CG2 8-mers are more preference in CGI sequences (AUC > 0.99). This validates our conjecture in principle.     

Assessment of sustainable development: A case study of Wuhan as a pilot city in China

Building resource-conserving and environmental-friendly society (referred to as “two-oriented society”, TOS) is an important way proposed by the Chinese government to achieve sustainable development. In this paper, a pilot city of constructing TOS in China-Wuhan is taken as a case to evaluate the performance of TOS from 2005 to 2012. Treating the indicators of TOS as multi-dimensional vectors, this paper proposes a methodological framework by integrating the methods of vector angle and Euclidean distance to measure the angle and distance between the vector of annual status of TOS and the vector of planning target of TOS. Based on this, the paper employs coordination (the angle between the two vectors) and effectiveness (the distance between the two vectors) to describe the performance of TOS and its subsystems, including economic development (ED), social and people's well-being (SW), resource consumption (RC), resource recycling (RR), environmental quality (EQ) and pollution control (PC). Moreover, grey relational analysis approach is used to analyse the core factors influencing TOS construction. Results reveal that the performance of TOS in Wuhan is continually improved in the study period while the performance of its subsystems shows several differences: (1) both coordination and effectiveness of TOS, ED and SW keep on improving, while those of EQ fluctuate; (2) the effectiveness of both RR and PC shows a downward trend while the coordination of them fluctuates; (3) the actual value of RC indicators reaches the planning targets. Based on the analysis of determinants, we suggest that strengthening technological ability and adding investment are extremely important to improve the performance of RC and PC. For the sake of improving RR, it is critical to provide more government public expenditure and encourage financial institutions to provide more loans to stimulate and support the businesses. Moreover, increasing the amount of R&D funding and maintaining steady external economic environment are proved to be effective to improve all subsystems of TOS.     

Bilinguites — a cosmopolitan Late Carboniferous ammonoid genus

The Bashkirian (Late Carboniferous) ammonoid genus Bilinguites has a nearly global distribution in the tropical and subtropical zones and 25 species have been described up till now. Most of them are considered endemic, but some may have a wide geographic distribution. Our study on new and previously collected materials from North China (Gansu and Ningxia) shows that the stratigraphically youngest species of Bilinguites in North China and Western Europe are morphologically very similar, possibly indicating correspondence of the ammonoid faunas. Bilinguites scalpratus is revised and established as a stratigraphically important species of the genus in North China; it co-occurs with the first gastrioceratid species Cancelloceras pachygyrum. This occurrence can be correlated with the Western European co-occurrence of Cancelloceras cancellatum and Bilinguites superbilinguis at the base of the G₁ Zone.     

Quantifying the relationship between urban development intensity and carbon dioxide emissions using a panel data analysis

As a factor associated with urban management and planning, urban development intensity (UDI) could in fact form the basis for a new rationale in coordinating urban sustainable development and reducing CO₂ emissions. However, existing literature engaging in the task of quantifying the impacts of urban development intensity on CO₂ emissions is limited. Therefore, the goal of this study is to quantify the relationship between urban development intensity and CO₂ emissions for a panel made up of the five major cities in China (Beijing, Shanghai, Tianjin, Chongqing and Guangzhou) using time series data from 1995 to 2011. Firstly, this study calculated CO₂ emissions for the five selected cities and presented a comprehensive index system for the assessment of the level of urban development intensity based on six aspects (land-use intensity, economic intensity, population intensity, infrastructure intensity, public service intensity and eco-environmental intensity) using locally important socioeconomic variables. Panel data analysis was subsequently utilised in order to quantify the relationships between urban development intensity and CO₂ emissions. The empirical results of the study indicate that factors such as land-use intensity, economic intensity, population intensity, infrastructure intensity and public service intensity exert a positive influence on CO₂ emissions. Further, the estimated coefficients suggest that land-use intensity is the most important factor in relation to CO₂ emissions. Conversely, eco-environmental intensity was identified as having a major inhibitory effect on CO₂ emission levels. The findings of this study hold important implications for both academics and practitioners, indicating that, on the path towards developing low-carbon cities in China, the effects of urban development intensity must be taken into consideration.     

Introducing a new method for assessing spatially explicit processes of landscape fragmentation

Landscape fragmentation is commonly defined as having five distinct phases (perforation, dissection, subdivision, shrinkage, and attrition). Previous studies focus on using landscape pattern metrics to interpret the phase of the landscape. A critical but underinvestigated aspect is that these five phases are also spatially explicit processes. This study proposes a new method to map and measure the different spatially explicit processes of landscape fragmentation. Unlike previous studies that are based on landscape pattern metrics, this current study measures landscape change directly. The new method is applied to Bao’an District in Shenzhen, China, to investigate forest land fragmentation under rapid urbanization. Landsat data were used to map the land use distributions from 1978 to 2009. Results show that different spatial processes occur simultaneously throughout the study area as well as in different study periods of forest fragmentation. Shrinkage was the dominant spatial process in the early period. In the later period, subdivision played a more important role, followed by attrition. Interestingly, urban land was not the leading land use that directly encroached on forest land, as many other studies have shown. Instead, forest land was first converted to orchard land, and orchard land was converted to urban land. The study contributes to Forman's general model of spatially explicit processes of landscape fragmentation and holds implications for urban planning policy and practice. The study concludes that the new method is effective in understanding and assessing forest land fragmentation, especially in the context of rapid urbanization.